Геном прокариот/Материалы:NC 007643
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LOCUS NC_007643 4352825 bp DNA circular BCT 03-APR-2006
DEFINITION Rhodospirillum rubrum ATCC 11170, complete genome.
ACCESSION NC_007643
VERSION NC_007643.1 GI:83591340
KEYWORDS .
SOURCE Rhodospirillum rubrum ATCC 11170
ORGANISM Rhodospirillum rubrum ATCC 11170
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
Rhodospirillaceae; Rhodospirillum.
REFERENCE 1 (bases 1 to 4352825)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P.,
Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C.
TITLE Complete sequence of the chromosome of Rhodospirillum rubrum ATCC
11170
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4352825)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-DEC-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4352825)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C.,
Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J.,
Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000230.
URL -- http://www.jgi.doe.gov
Source DNA available from Gary Roberts (groberts@bact.wisc.edu)
Bacteria available from ATCC: ATCC 11170
Contacts: Gary Roberts (groberts@bact.wisc.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 17016 | 17102 | - | 87 | 83591340 | Rru_AR0001 | - | 15 Leu tRNA |
| 117325 | 117401 | - | 77 | 83591340 | Rru_AR0002 | - | 11 Arg tRNA |
| 151241 | 151317 | + | 77 | 83591340 | Rru_AR0003 | - | 11 Arg tRNA |
| 192528 | 194004 | + | 1477 | 83591340 | Rru_AR0004 | - | 16S ribosomal RNA |
| 194189 | 194265 | + | 77 | 83591340 | Rru_AR0005 | - | 14 Ile tRNA |
| 194332 | 194407 | + | 76 | 83591340 | Rru_AR0006 | - | 02 Ala tRNA |
| 194770 | 197527 | + | 2758 | 83591340 | Rru_AR0007 | - | 23S ribosomal RNA |
| 197647 | 197761 | + | 115 | 83591340 | Rru_AR0008 | - | 5S ribosomal RNA |
| 197858 | 197934 | + | 77 | 83591340 | Rru_AR0009 | - | 16 Met tRNA |
| 306906 | 306979 | + | 74 | 83591340 | Rru_AR0010 | - | 05 Gln tRNA |
| 324100 | 324174 | - | 75 | 83591340 | Rru_AR0011 | - | 05 Gln tRNA |
| 363106 | 363181 | + | 76 | 83591340 | Rru_AR0012 | - | 02 Ala tRNA |
| 363384 | 363459 | + | 76 | 83591340 | Rru_AR0013 | - | 02 Ala tRNA |
| 407699 | 407790 | + | 92 | 83591340 | Rru_AR0014 | - | 08 Ser tRNA |
| 468041 | 468126 | - | 86 | 83591340 | Rru_AR0015 | - | 15 Leu tRNA |
| 559697 | 559772 | + | 76 | 83591340 | Rru_AR0016 | - | 10 Lys tRNA |
| 795406 | 795496 | + | 91 | 83591340 | Rru_AR0017 | - | 08 Ser tRNA |
| 911398 | 912874 | + | 1477 | 83591340 | Rru_AR0018 | - | 16S ribosomal RNA |
| 913057 | 913133 | + | 77 | 83591340 | Rru_AR0019 | - | 14 Ile tRNA |
| 913200 | 913275 | + | 76 | 83591340 | Rru_AR0020 | - | 02 Ala tRNA |
| 913637 | 916394 | + | 2758 | 83591340 | Rru_AR0021 | - | 23S ribosomal RNA |
| 916513 | 916627 | + | 115 | 83591340 | Rru_AR0022 | - | 5S ribosomal RNA |
| 916723 | 916799 | + | 77 | 83591340 | Rru_AR0023 | - | 16 Met tRNA |
| 1145454 | 1145802 | - | 349 | 83591340 | Rru_AR0024 | - | RNA component of RNase P |
| 1160163 | 1160238 | + | 76 | 83591340 | Rru_AR0025 | - | 04 Glu tRNA |
| 1465406 | 1465495 | + | 90 | 83591340 | Rru_AR0026 | - | 08 Ser tRNA |
| 1792276 | 1792351 | - | 76 | 83591340 | Rru_AR0027 | - | 04 Glu tRNA |
| 1825837 | 1825921 | + | 85 | 83591340 | Rru_AR0028 | - | 15 Leu tRNA |
| 1833693 | 1833768 | + | 76 | 83591340 | Rru_AR0029 | - | 13 Val tRNA |
| 1934224 | 1934300 | + | 77 | 83591340 | Rru_AR0030 | - | 03 Pro tRNA |
| 1934676 | 1934752 | + | 77 | 83591340 | Rru_AR0031 | - | 11 Arg tRNA |
| 1960034 | 1960110 | + | 77 | 83591340 | Rru_AR0032 | - | 03 Pro tRNA |
| 1998244 | 1998333 | + | 90 | 83591340 | Rru_AR0033 | - | 08 Ser tRNA |
| 2032987 | 2033062 | - | 76 | 83591340 | Rru_AR0034 | - | 10 Lys tRNA |
| 2094273 | 2094346 | + | 74 | 83591340 | Rru_AR0035 | - | 19 Cys tRNA |
| 2094428 | 2094502 | + | 75 | 83591340 | Rru_AR0036 | - | 07 Asn tRNA |
| 2305924 | 2306010 | - | 87 | 83591340 | Rru_AR0037 | - | 15 Leu tRNA |
| 2331595 | 2331671 | + | 77 | 83591340 | Rru_AR0038 | - | 16 Met tRNA |
| 2412007 | 2412083 | - | 77 | 83591340 | Rru_AR0039 | - | 09 His tRNA |
| 2560697 | 2560938 | + | 242 | 83591340 | Rru_AR0040 | - | tmRNA, 10Sa RNA |
| 2731721 | 2731797 | - | 77 | 83591340 | Rru_AR0041 | - | 16 Met tRNA |
| 2731893 | 2732007 | - | 115 | 83591340 | Rru_AR0042 | - | 5S ribosomal RNA |
| 2732127 | 2734884 | - | 2758 | 83591340 | Rru_AR0043 | - | 23S ribosomal RNA |
| 2735247 | 2735322 | - | 76 | 83591340 | Rru_AR0044 | - | 02 Ala tRNA |
| 2735389 | 2735465 | - | 77 | 83591340 | Rru_AR0045 | - | 14 Ile tRNA |
| 2735650 | 2737126 | - | 1477 | 83591340 | Rru_AR0046 | - | 16S ribosomal RNA |
| 2962229 | 2962303 | - | 75 | 83591340 | Rru_AR0047 | - | 13 Val tRNA |
| 3125185 | 3125260 | - | 76 | 83591340 | Rru_AR0048 | - | 20 Trp tRNA |
| 3126888 | 3126961 | - | 74 | 83591340 | Rru_AR0049 | - | 01 Gly tRNA |
| 3126989 | 3127074 | - | 86 | 83591340 | Rru_AR0050 | - | 18 Tyr tRNA |
| 3128216 | 3128291 | + | 76 | 83591340 | Rru_AR0051 | - | 12 Thr tRNA |
| 3194938 | 3195013 | - | 76 | 83591340 | Rru_AR0052 | - | 17 Phe tRNA |
| 3322206 | 3322281 | - | 76 | 83591340 | Rru_AR0053 | - | 16 Met tRNA |
| 3378255 | 3378329 | + | 75 | 83591340 | Rru_AR0054 | - | 12 Thr tRNA |
| 3378495 | 3378569 | + | 75 | 83591340 | Rru_AR0055 | - | 12 Thr tRNA |
| 3379605 | 3379681 | + | 77 | 83591340 | Rru_AR0056 | - | 06 Asp tRNA |
| 3399757 | 3399833 | - | 77 | 83591340 | Rru_AR0057 | - | 03 Pro tRNA |
| 3491233 | 3491307 | + | 75 | 83591340 | Rru_AR0058 | - | 13 Val tRNA |
| 3719917 | 3719990 | - | 74 | 83591340 | Rru_AR0059 | - | 01 Gly tRNA |
| 3806944 | 3807058 | - | 115 | 83591340 | Rru_AR0060 | - | 5S ribosomal RNA |
| 3807175 | 3809932 | - | 2758 | 83591340 | Rru_AR0061 | - | 23S ribosomal RNA |
| 3810295 | 3810370 | - | 76 | 83591340 | Rru_AR0062 | - | 02 Ala tRNA |
| 3810437 | 3810513 | - | 77 | 83591340 | Rru_AR0063 | - | 14 Ile tRNA |
| 3810698 | 3812174 | - | 1477 | 83591340 | Rru_AR0064 | - | 16S ribosomal RNA |
| 3825931 | 3826007 | - | 77 | 83591340 | Rru_AR0065 | - | 11 Arg tRNA |
| 3998595 | 3998694 | - | 100 | 83591340 | Rru_AR0066 | - | SRP RNA, 4.5S RNA |
| 4023191 | 4023277 | - | 87 | 83591340 | Rru_AR0067 | - | 15 Leu tRNA |
| 4059305 | 4059380 | + | 76 | 83591340 | Rru_AR0068 | - | 02 Ala tRNA |
| 4108039 | 4108113 | - | 75 | 83591340 | Rru_AR0069 | - | 12 Thr tRNA |
| 4262308 | 4262382 | + | 75 | 83591340 | Rru_AR0070 | - | 01 Gly tRNA |

