Геном прокариот/Материалы:NC 008531
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_008531 2038396 bp DNA circular BCT 31-OCT-2006
DEFINITION Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete
genome.
ACCESSION NC_008531
VERSION NC_008531.1 GI:116617174
KEYWORDS .
SOURCE Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
ORGANISM Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Bacteria; Firmicutes; Lactobacillales; Leuconostoc.
REFERENCE 1 (bases 1 to 2038396)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 2038396)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2038396)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000414.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662187
Source DNA and bacteria available from Fred Breidt
(breidt@ncsu.edu)
Bacteria also available from ATCC: ATCC 8293
Contacts: Fred Breidt (breidt@ncsu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)
URL -- http://www.fidelitysystems.com Project Information
available at: http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 22669 | 24217 | + | 1549 | 116617174 | LEUM_r0019 | - | 16S ribosomal RNA |
| 24330 | 24402 | + | 73 | 116617174 | LEUM_t0020 | - | 02 Ala tRNA |
| 24593 | 27506 | + | 2914 | 116617174 | LEUM_r0021 | - | 23S ribosomal RNA |
| 27624 | 27712 | + | 89 | 116617174 | LEUM_r0022 | - | 5S ribosomal RNA |
| 27762 | 27855 | + | 94 | 116617174 | LEUM_t0023 | - | 08 Ser tRNA |
| 27857 | 27929 | + | 73 | 116617174 | LEUM_t0024 | - | 13 Val tRNA |
| 27970 | 28042 | + | 73 | 116617174 | LEUM_t0025 | - | 12 Thr tRNA |
| 28051 | 28122 | + | 72 | 116617174 | LEUM_t0026 | - | 01 Gly tRNA |
| 28128 | 28211 | + | 84 | 116617174 | LEUM_t0027 | - | 15 Leu tRNA |
| 28217 | 28290 | + | 74 | 116617174 | LEUM_t0028 | - | 11 Arg tRNA |
| 28359 | 28432 | + | 74 | 116617174 | LEUM_t0029 | - | 03 Pro tRNA |
| 28461 | 28534 | + | 74 | 116617174 | LEUM_t0030 | - | 16 Met tRNA |
| 28548 | 28621 | + | 74 | 116617174 | LEUM_t0031 | - | 16 Met tRNA |
| 28646 | 28735 | + | 90 | 116617174 | LEUM_t0032 | - | 08 Ser tRNA |
| 28767 | 28840 | + | 74 | 116617174 | LEUM_t0033 | - | 16 Met tRNA |
| 28843 | 28916 | + | 74 | 116617174 | LEUM_t0034 | - | 06 Asp tRNA |
| 28937 | 29009 | + | 73 | 116617174 | LEUM_t0035 | - | 17 Phe tRNA |
| 29037 | 29107 | + | 71 | 116617174 | LEUM_t0036 | - | 01 Gly tRNA |
| 29140 | 29213 | + | 74 | 116617174 | LEUM_t0037 | - | 14 Ile tRNA |
| 47149 | 47220 | - | 72 | 116617174 | LEUM_t0056 | - | 07 Asn tRNA |
| 114832 | 114907 | - | 76 | 116617174 | LEUM_t0132 | - | 10 Lys tRNA |
| 148404 | 149952 | + | 1549 | 116617174 | LEUM_r0163 | - | 16S ribosomal RNA |
| 150065 | 150137 | + | 73 | 116617174 | LEUM_t0164 | - | 02 Ala tRNA |
| 150328 | 153241 | + | 2914 | 116617174 | LEUM_r0165 | - | 23S ribosomal RNA |
| 153359 | 153447 | + | 89 | 116617174 | LEUM_r0166 | - | 5S ribosomal RNA |
| 153497 | 153590 | + | 94 | 116617174 | LEUM_t0167 | - | 08 Ser tRNA |
| 153592 | 153664 | + | 73 | 116617174 | LEUM_t0168 | - | 13 Val tRNA |
| 153705 | 153777 | + | 73 | 116617174 | LEUM_t0169 | - | 12 Thr tRNA |
| 153786 | 153857 | + | 72 | 116617174 | LEUM_t0170 | - | 01 Gly tRNA |
| 153863 | 153946 | + | 84 | 116617174 | LEUM_t0171 | - | 15 Leu tRNA |
| 153952 | 154025 | + | 74 | 116617174 | LEUM_t0172 | - | 11 Arg tRNA |
| 154094 | 154167 | + | 74 | 116617174 | LEUM_t0173 | - | 03 Pro tRNA |
| 154196 | 154269 | + | 74 | 116617174 | LEUM_t0174 | - | 16 Met tRNA |
| 154283 | 154356 | + | 74 | 116617174 | LEUM_t0175 | - | 16 Met tRNA |
| 154381 | 154470 | + | 90 | 116617174 | LEUM_t0176 | - | 08 Ser tRNA |
| 154502 | 154575 | + | 74 | 116617174 | LEUM_t0177 | - | 16 Met tRNA |
| 154578 | 154651 | + | 74 | 116617174 | LEUM_t0178 | - | 06 Asp tRNA |
| 154672 | 154744 | + | 73 | 116617174 | LEUM_t0179 | - | 17 Phe tRNA |
| 154772 | 154842 | + | 71 | 116617174 | LEUM_t0180 | - | 01 Gly tRNA |
| 154875 | 154948 | + | 74 | 116617174 | LEUM_t0181 | - | 14 Ile tRNA |
| 197140 | 197222 | + | 83 | 116617174 | LEUM_t0235 | - | 18 Tyr tRNA |
| 197260 | 197334 | + | 75 | 116617174 | LEUM_t0236 | - | 05 Gln tRNA |
| 197424 | 197511 | - | 88 | 116617174 | LEUM_t0237 | - | 15 Leu tRNA |
| 205620 | 205691 | - | 72 | 116617174 | LEUM_t0245 | - | Xaa tRNA |
| 247526 | 247601 | + | 76 | 116617174 | LEUM_t0291 | - | 10 Lys tRNA |
| 273252 | 273609 | + | 358 | 116617174 | LEUM_s0320 | - | tmRNA |
| 297748 | 297834 | + | 87 | 116617174 | LEUM_t0342 | - | 15 Leu tRNA |
| 318416 | 318487 | + | 72 | 116617174 | LEUM_t0365 | - | 04 Glu tRNA |
| 367415 | 367487 | + | 73 | 116617174 | LEUM_t0407 | - | 07 Asn tRNA |
| 367594 | 367666 | + | 73 | 116617174 | LEUM_t0408 | - | 07 Asn tRNA |
| 367671 | 367746 | + | 76 | 116617174 | LEUM_t0409 | - | 12 Thr tRNA |
| 370545 | 370616 | - | 72 | 116617174 | LEUM_t0413 | - | 04 Glu tRNA |
| 381019 | 381090 | - | 72 | 116617174 | LEUM_t0423 | - | 05 Gln tRNA |
| 477234 | 477307 | + | 74 | 116617174 | LEUM_t0514 | - | 10 Lys tRNA |
| 500070 | 500140 | + | 71 | 116617174 | LEUM_t0535 | - | 19 Cys tRNA |
| 589604 | 589679 | - | 76 | 116617174 | LEUM_t0622 | - | 11 Arg tRNA |
| 621520 | 621853 | + | 334 | 116617174 | LEUM_s0654 | - | RNA_RNaseP_classB |
| 626478 | 626552 | + | 75 | 116617174 | LEUM_t0659 | - | 04 Glu tRNA |
| 722634 | 722707 | + | 74 | 116617174 | LEUM_t0744 | - | 16 Met tRNA |
| 1311944 | 1312018 | + | 75 | 116617174 | LEUM_t1320 | - | 04 Glu tRNA |
| 1319646 | 1319719 | - | 74 | 116617174 | LEUM_t1333 | - | 11 Arg tRNA |
| 1325872 | 1325960 | - | 89 | 116617174 | LEUM_t1341 | - | 08 Ser tRNA |
| 1461108 | 1461191 | + | 84 | 116617174 | LEUM_t1465 | - | 15 Leu tRNA |
| 1666982 | 1667053 | - | 72 | 116617174 | LEUM_t1693 | - | 07 Asn tRNA |
| 1677110 | 1677198 | - | 89 | 116617174 | LEUM_r1705 | - | 5S ribosomal RNA |
| 1677316 | 1680229 | - | 2914 | 116617174 | LEUM_r1706 | - | 23S ribosomal RNA |
| 1680420 | 1680492 | - | 73 | 116617174 | LEUM_t1707 | - | 02 Ala tRNA |
| 1680605 | 1682153 | - | 1549 | 116617174 | LEUM_r1708 | - | 16S ribosomal RNA |
| 1801982 | 1802065 | - | 84 | 116617174 | LEUM_t1826 | - | 15 Leu tRNA |
| 1802089 | 1802164 | - | 76 | 116617174 | LEUM_t1827 | - | 09 His tRNA |
| 1802167 | 1802240 | - | 74 | 116617174 | LEUM_t1828 | - | 20 Trp tRNA |
| 1802336 | 1802412 | - | 77 | 116617174 | LEUM_t1829 | - | 06 Asp tRNA |
| 1802415 | 1802487 | - | 73 | 116617174 | LEUM_t1830 | - | 13 Val tRNA |
| 1802489 | 1802582 | - | 94 | 116617174 | LEUM_t1831 | - | 08 Ser tRNA |
| 1802632 | 1802720 | - | 89 | 116617174 | LEUM_r1832 | - | 5S ribosomal RNA |
| 1802838 | 1805751 | - | 2914 | 116617174 | LEUM_r1833 | - | 23S ribosomal RNA |
| 1805942 | 1806014 | - | 73 | 116617174 | LEUM_t1834 | - | 02 Ala tRNA |
| 1806127 | 1807675 | - | 1549 | 116617174 | LEUM_r1835 | - | 16S ribosomal RNA |
| 1834566 | 1834638 | - | 73 | 116617174 | LEUM_t1858 | - | 12 Thr tRNA |
| 1834714 | 1834795 | - | 82 | 116617174 | LEUM_t1859 | - | 15 Leu tRNA |
| 1839615 | 1839689 | - | 75 | 116617174 | LEUM_t1865 | - | 04 Glu tRNA |
| 1882699 | 1882786 | - | 88 | 116617174 | LEUM_t1914 | - | 08 Ser tRNA |
| 1893697 | 1893771 | - | 75 | 116617174 | LEUM_t1924 | - | 05 Gln tRNA |
| 1893809 | 1893891 | - | 83 | 116617174 | LEUM_t1925 | - | 18 Tyr tRNA |
| 2022929 | 2022999 | + | 71 | 116617174 | LEUM_t2056 | - | 14 Ile tRNA |

