Геном прокариот/Материалы:NC 009767
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LOCUS NC_009767 5723298 bp DNA circular BCT 04-SEP-2007
DEFINITION Roseiflexus castenholzii DSM 13941, complete genome.
ACCESSION NC_009767
VERSION NC_009767.1 GI:156740028
KEYWORDS .
SOURCE Roseiflexus castenholzii DSM 13941
ORGANISM Roseiflexus castenholzii DSM 13941
Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae;
Roseiflexus.
REFERENCE 1 (bases 1 to 5723298)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S.,
Tsukatani,Y. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Roseiflexus castenholzii DSM 13941
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5723298)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5723298)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S.,
Tsukatani,Y. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000804.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000375
Source DNA available from Donald A. Bryant (dab14@psu.edu)
Bacteria available from DSMZ: DSM 13941
Contacts: Donald A. Bryant (dab14@psu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 41302 | 41378 | + | 77 | 156740028 | Rcas_R0001 | - | 03 Pro tRNA |
| 75981 | 76055 | + | 75 | 156740028 | Rcas_R0002 | - | 01 Gly tRNA |
| 133844 | 133920 | + | 77 | 156740028 | Rcas_R0003 | - | 04 Glu tRNA |
| 196893 | 196967 | - | 75 | 156740028 | Rcas_R0004 | - | 12 Thr tRNA |
| 258771 | 258844 | - | 74 | 156740028 | Rcas_R0005 | - | 01 Gly tRNA |
| 540627 | 540702 | + | 76 | 156740028 | Rcas_R0006 | - | 11 Arg tRNA |
| 872572 | 872647 | - | 76 | 156740028 | Rcas_R0007 | - | 16 Met tRNA |
| 886184 | 886278 | - | 95 | 156740028 | Rcas_R0008 | - | SRP RNA; RNA component of signal recognition particle |
| 962602 | 962675 | + | 74 | 156740028 | Rcas_R0009 | - | 05 Gln tRNA |
| 1572991 | 1573075 | - | 85 | 156740028 | Rcas_R0010 | - | 15 Leu tRNA |
| 1586291 | 1586366 | - | 76 | 156740028 | Rcas_R0011 | - | 06 Asp tRNA |
| 1586377 | 1586453 | - | 77 | 156740028 | Rcas_R0012 | - | 04 Glu tRNA |
| 1609324 | 1609399 | - | 76 | 156740028 | Rcas_R0013 | - | 17 Phe tRNA |
| 1609442 | 1609517 | - | 76 | 156740028 | Rcas_R0014 | - | 13 Val tRNA |
| 1609519 | 1609607 | - | 89 | 156740028 | Rcas_R0015 | - | 15 Leu tRNA |
| 1757168 | 1757243 | - | 76 | 156740028 | Rcas_R0016 | - | 12 Thr tRNA |
| 1846648 | 1846722 | + | 75 | 156740028 | Rcas_R0017 | - | 07 Asn tRNA |
| 1881873 | 1882239 | - | 367 | 156740028 | Rcas_R0018 | - | tmRNA |
| 1922170 | 1922245 | + | 76 | 156740028 | Rcas_R0019 | - | 11 Arg tRNA |
| 2187193 | 2187269 | + | 77 | 156740028 | Rcas_R0020 | - | 14 Ile tRNA |
| 2187313 | 2187388 | + | 76 | 156740028 | Rcas_R0021 | - | 02 Ala tRNA |
| 2629831 | 2629916 | + | 86 | 156740028 | Rcas_R0022 | - | 15 Leu tRNA |
| 2629938 | 2630014 | + | 77 | 156740028 | Rcas_R0023 | - | 03 Pro tRNA |
| 2784838 | 2784914 | - | 77 | 156740028 | Rcas_R0024 | - | 13 Val tRNA |
| 3224354 | 3224428 | + | 75 | 156740028 | Rcas_R0025 | - | 16 Met tRNA |
| 3492830 | 3492920 | - | 91 | 156740028 | Rcas_R0026 | - | 08 Ser tRNA |
| 3492941 | 3493032 | - | 92 | 156740028 | Rcas_R0027 | - | 08 Ser tRNA |
| 3493071 | 3493146 | - | 76 | 156740028 | Rcas_R0028 | - | 20 Trp tRNA |
| 3496423 | 3496513 | + | 91 | 156740028 | Rcas_R0029 | - | 08 Ser tRNA |
| 3602007 | 3602081 | - | 75 | 156740028 | Rcas_R0030 | - | 10 Lys tRNA |
| 3676935 | 3677021 | + | 87 | 156740028 | Rcas_R0031 | - | 15 Leu tRNA |
| 3677058 | 3677131 | + | 74 | 156740028 | Rcas_R0032 | - | 05 Gln tRNA |
| 3758719 | 3758795 | - | 77 | 156740028 | Rcas_R0033 | - | 11 Arg tRNA |
| 3835323 | 3835408 | - | 86 | 156740028 | Rcas_R0034 | - | 15 Leu tRNA |
| 3856207 | 3856283 | + | 77 | 156740028 | Rcas_R0035 | - | 03 Pro tRNA |
| 3882829 | 3882903 | - | 75 | 156740028 | Rcas_R0036 | - | 16 Met tRNA |
| 3882909 | 3883024 | - | 116 | 156740028 | Rcas_R0037 | - | 5S ribosomal RNA |
| 3883094 | 3886016 | - | 2923 | 156740028 | Rcas_R0038 | - | 23S ribosomal RNA |
| 3886210 | 3887678 | - | 1469 | 156740028 | Rcas_R0039 | - | 16S ribosomal RNA |
| 4059892 | 4059967 | + | 76 | 156740028 | Rcas_R0040 | - | 02 Ala tRNA |
| 4059974 | 4060049 | + | 76 | 156740028 | Rcas_R0041 | - | 02 Ala tRNA |
| 4361874 | 4361948 | - | 75 | 156740028 | Rcas_R0042 | - | 19 Cys tRNA |
| 4620290 | 4620366 | + | 77 | 156740028 | Rcas_R0043 | - | 11 Arg tRNA |
| 4620422 | 4620511 | + | 90 | 156740028 | Rcas_R0044 | - | 08 Ser tRNA |
| 4718817 | 4718891 | + | 75 | 156740028 | Rcas_R0045 | - | 09 His tRNA |
| 4986130 | 4986205 | - | 76 | 156740028 | Rcas_R0046 | - | 10 Lys tRNA |
| 5017289 | 5017364 | + | 76 | 156740028 | Rcas_R0047 | - | 11 Arg tRNA |
| 5059752 | 5059827 | - | 76 | 156740028 | Rcas_R0048 | - | 01 Gly tRNA |
| 5069471 | 5069547 | - | 77 | 156740028 | Rcas_R0049 | - | 13 Val tRNA |
| 5183512 | 5184980 | + | 1469 | 156740028 | Rcas_R0050 | - | 16S ribosomal RNA |
| 5185174 | 5188096 | + | 2923 | 156740028 | Rcas_R0051 | - | 23S ribosomal RNA |
| 5188166 | 5188281 | + | 116 | 156740028 | Rcas_R0052 | - | 5S ribosomal RNA |
| 5188287 | 5188361 | + | 75 | 156740028 | Rcas_R0053 | - | 16 Met tRNA |
| 5232470 | 5232546 | + | 77 | 156740028 | Rcas_R0054 | - | 04 Glu tRNA |
| 5573172 | 5573247 | - | 76 | 156740028 | Rcas_R0055 | - | 12 Thr tRNA |
| 5573324 | 5573410 | - | 87 | 156740028 | Rcas_R0056 | - | 18 Tyr tRNA |

